PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BS_9B9661BD3.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 256aa    MW: 29288.1 Da    PI: 6.5045
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BS_9B9661BD3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.51.2e-13361141297
                            HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                     B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                            k + +++p++  ++    ++ s t++l  ++gr ++v +  +   g+ v+++GW  Fv a++++e+D+++F ++g+s+f   +++f
  Traes_6BS_9B9661BD3.1  36 K-NSIRIPRELSTHLR--SRISDTIKLSAPNGRAYDVVV--TWEFGELVIRSGWDAFVTAHHIEENDTFLFIYHGNSNF--EIHIF 114
                            3.55999*99874444..45888****************..5556679***************************9999..66666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.46E-1822119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.75824117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-1727119IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.002727117IPR003340B3 DNA binding domain
CDDcd100179.77E-1435115No hitNo description
PfamPF023621.3E-1136115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-4188255IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MNEDCENCAF WRDHYYWDHM GDEKKQFSAV AKGDFKNSIR IPRELSTHLR SRISDTIKLS  60
APNGRAYDVV VTWEFGELVI RSGWDAFVTA HHIEENDTFL FIYHGNSNFE IHIFNSHGCE  120
KMASCFQSPS EIFGIFPPSE PCDHHVLNGQ AAPNPRHVQT QVEFDYTMST GCHLTKSQDE  180
KVVEIARKIR SEIPLYVAIM KKLNVNVKDC SINIPLRLVR HLKEEAGSAI IKLEAPDGNI  240
YNVRASKHSE DQVVLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW5GRV10.0W5GRV1_WHEAT; Uncharacterized protein
TrEMBLW5ECE60.0W5ECE6_WHEAT; Uncharacterized protein
STRINGMLOC_16480.21e-175(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1636348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-24B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]